[OS X TeX] Latexmk errors that I can't diagnose
Nathan A. Paxton
napaxton at gmail.com
Sun Jul 7 15:32:09 EDT 2013
I replaced the Texshop bin files as well. The latexmk that's in v4.35 is the one at
> Macintosh:~ user$ which latexmk/usr/texbin/latexmk
> Macintosh:~ user$ latexmk -v
> Latexmk, John Collins, 11 Nov. 2012. Version 4.35
> Macintosh:~ user$
>
I went to typesetting a (mostly) minimal file, and here's what I get for the log output :
> Latexmk: This is Latexmk, John Collins, 2 July 2013, version: 4.37.
> **** Report bugs etc to John Collins <collins at phys.psu.edu>. ****
> Rule 'biber minimalcites': File changes, etc:
> Non-existent destination files:
> 'minimalcites.bbl'
> ------------
> Run number 1 of rule 'biber minimalcites'
> ------------
> ------------
> Running 'biber "minimalcites"'
> ------------
> Latexmk: applying rule 'biber minimalcites'...
> data source /var/folders/wp/xq1g9lt13m16gjnd3z8wfl4w0000gn/T/par-6e617468616e706178746f6e/cache-ef42c8d5d44e40bdd24828b0ae70de275e379c88//inc/lib/Biber/LaTeX/recode_data.xml not found in .
> INFO - This is Biber 1.5
> INFO - Logfile is 'minimalcites.blg'
> Latexmk: Failed to find one or more biber source files:
> NONE
> Rule 'pdflatex': File changes, etc:
> Changed files, or newly in use since previous run(s):
> 'minimalcites.tex'
> ------------
> Run number 1 of rule 'pdflatex'
> ------------
> ------------
> Running 'pdflatex --shell-escape --synctex=1 --file-line-error -recorder "minimalcites.tex"'
> ------------
> Latexmk: applying rule 'pdflatex'...
> This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012)
> \write18 enabled.
> entering extended mode
> (./minimalcites.tex
> LaTeX2e <2011/06/27>
> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
> rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi
> c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
> h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
> h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
> ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
> rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
> kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
> piedmontese, polish, portuguese, romanian, romansh, russian, sanskrit, serbian
> , serbianc, slovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, u
> ppersorbian, welsh, loaded.
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/article.cls
> Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/size11.clo))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.sty
>
> Package biblatex Warning: No "backend" specified, using Biber backend.
> (biblatex) To use BibTeX, load biblatex with
> (biblatex) the "backend=bibtex" option.
>
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex2.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/etoolbox/etoolbox.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/etex-pkg/etex.sty))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/kvoptions.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/etexcmds.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/logreq/logreq.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/logreq/logreq.def))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ifthen.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/url/url.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-dm.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-compat.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-natbib.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/bbx/standard.bbx))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/cbx/authoryear.cbx)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.cfg)))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/lbx/english.lbx)
> (./minimalcites.aux)
> No file minimalcites.bbl.
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/omscmr.fd)
>
> LaTeX Warning: Citation 'collier2007a' on page 1 undefined on input line 10.
>
>
> LaTeX Warning: Citation 'frieden2006a' on page 1 undefined on input line 11.
>
>
> LaTeX Warning: Citation 'haslamschaferbeaudet2009a' on page 1 undefined on inpu
> t line 12.
>
>
> LaTeX Warning: Citation 'sen1999a' on page 1 undefined on input line 13.
>
> [1{/Users/nathanpaxton/Library/texlive/2012/texmf-var/fonts/map/pdftex/updmap/p
> dftex.map}] (./minimalcites.aux)
>
> LaTeX Warning: There were undefined references.
>
>
> Package biblatex Warning: Please (re)run Biber on the file:
> (biblatex) minimalcites
> (biblatex) and rerun LaTeX afterwards.
>
> )</usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb
> ></usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb><
> /usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
> Output written on minimalcites.pdf (1 page, 33913 bytes).
> SyncTeX written on minimalcites.synctex.gz.
> Transcript written on minimalcites.log.
> Latexmk: Non-existent bbl file 'minimalcites.bbl'
> No file minimalcites.bbl.
> Latexmk: Citation 'collier2007a' on page 1 undefined
> Latexmk: Citation 'frieden2006a' on page 1 undefined
> Latexmk: Citation 'haslamschaferbeaudet2009a' on page 1 undefined
> Latexmk: Citation 'haslamschaferbeaudet2009a' on page 1 undefined
> Latexmk: Citation 'sen1999a' on page 1 undefined
> Latexmk: Log file says output to 'minimalcites.pdf'
> Latexmk: Found biber source file(s) [minimalcites.bcf]
> Latexmk: Summary of warnings:
> Latex failed to resolve 5 citation(s)
> Rule 'pdflatex': File changes, etc:
> Changed files, or newly in use since previous run(s):
> 'minimalcites.aux'
> ------------
> Run number 2 of rule 'pdflatex'
> ------------
> ------------
> Running 'pdflatex --shell-escape --synctex=1 --file-line-error -recorder "minimalcites.tex"'
> ------------
> Latexmk: applying rule 'pdflatex'...
> This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012)
> \write18 enabled.
> entering extended mode
> (./minimalcites.tex
> LaTeX2e <2011/06/27>
> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
> rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi
> c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
> h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
> h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
> ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
> rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
> kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
> piedmontese, polish, portuguese, romanian, romansh, russian, sanskrit, serbian
> , serbianc, slovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, u
> ppersorbian, welsh, loaded.
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/article.cls
> Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/size11.clo))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.sty
>
> Package biblatex Warning: No "backend" specified, using Biber backend.
> (biblatex) To use BibTeX, load biblatex with
> (biblatex) the "backend=bibtex" option.
>
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex2.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/etoolbox/etoolbox.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/etex-pkg/etex.sty))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/oberdiek/kvoptions.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/etexcmds.sty
> (/usr/local/texlive/2012/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/logreq/logreq.sty
> (/usr/local/texlive/2012/texmf-dist/tex/latex/logreq/logreq.def))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/ifthen.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/url/url.sty)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-dm.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-compat.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/blx-natbib.def)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/bbx/standard.bbx))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/cbx/authoryear.cbx)
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/biblatex.cfg)))
> (/usr/local/texlive/2012/texmf-dist/tex/latex/biblatex/lbx/english.lbx)
> (./minimalcites.aux)
> No file minimalcites.bbl.
> (/usr/local/texlive/2012/texmf-dist/tex/latex/base/omscmr.fd)
>
> LaTeX Warning: Citation 'collier2007a' on page 1 undefined on input line 10.
>
>
> LaTeX Warning: Citation 'frieden2006a' on page 1 undefined on input line 11.
>
>
> LaTeX Warning: Citation 'haslamschaferbeaudet2009a' on page 1 undefined on inpu
> t line 12.
>
>
> LaTeX Warning: Citation 'sen1999a' on page 1 undefined on input line 13.
>
> [1{/Users/nathanpaxton/Library/texlive/2012/texmf-var/fonts/map/pdftex/updmap/p
> dftex.map}] (./minimalcites.aux)
>
> LaTeX Warning: There were undefined references.
>
>
> Package biblatex Warning: Please (re)run Biber on the file:
> (biblatex) minimalcites
> (biblatex) and rerun LaTeX afterwards.
>
> )</usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb
> ></usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb><
> /usr/local/texlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
> Output written on minimalcites.pdf (1 page, 33913 bytes).
> SyncTeX written on minimalcites.synctex.gz.
> Transcript written on minimalcites.log.
> Latexmk: Non-existent bbl file 'minimalcites.bbl'
> No file minimalcites.bbl.
> Latexmk: Citation 'collier2007a' on page 1 undefined
> Latexmk: Citation 'frieden2006a' on page 1 undefined
> Latexmk: Citation 'haslamschaferbeaudet2009a' on page 1 undefined
> Latexmk: Citation 'haslamschaferbeaudet2009a' on page 1 undefined
> Latexmk: Citation 'sen1999a' on page 1 undefined
> Latexmk: Log file says output to 'minimalcites.pdf'
> Latexmk: Found biber source file(s) [minimalcites.bcf]
> Latexmk: Summary of warnings:
> Latex failed to resolve 5 citation(s)
> Collected error summary (may duplicate other messages):
> biber minimalcites: Could not find all biber source files for 'minimalcites'
> Latexmk: Use the -f option to force complete processing,
> unless error was exceeding maximum runs of latex/pdflatex.
> Latexmk: All targets (minimalcites.pdf) are up-to-date
>
-----
Nathan Paxton
napaxton at gmail.com
If every professor who backed a lunatic politician were to be sacked, half the interesting minds in academia would be lost.
- The Economist, 5 Jan 2002
A morning without coffee is like something without something else.
On 7 Jul 2013, at 12:47 PM, Herbert Schulz wrote:
>
> On Jul 7, 2013, at 11:29 AM, "Nathan A. Paxton" <napaxton at gmail.com> wrote:
>
>> Hi all,
>>
>> I'm trying to diagnose a pdflatexmk error.
>>
>> I'm using Texshop 3.18 on Lion (10.7.5), with latexmk 4.35 and the latest engines from Herbert Schulz (4.37, I think), pn TL 2012. In the last couple of days, when I try to compile a syllabus with a bunch of references, the file no longer compiles, and it generates the following errors.
>>
>> - Could this be the result of using latexmk4.35 and the engines for 4.37? How can I update latexmk (without going to 2013, which I'm not ready to do quite yet) or downgrade the Schulz engines?
>> - What else do we need to know to make this work?
>>
>>
>> Latexmk: Non-existent bbl file 'syllabus.bbl'
>> No file syllabus.bbl.
>> Latexmk: Citation 'collier2007a' on page 4 undefined
>> Latexmk: Citation 'frieden2006a' on page 4 undefined
>>
>> [snip 34 more similar errors]
>>
>> Latexmk: Citation 'chang2011a' on page 9 undefined
>> Latexmk: Log file says output to 'syllabus.pdf'
>> Latexmk: Found biber source file(s) [syllabus.bcf]
>> Latexmk: Summary of warnings:
>> Latex failed to resolve 36 citation(s)
>> Collected error summary (may duplicate other messages):
>> biber syllabus: Could not find all biber source files for 'syllabus'
>> Latexmk: Use the -f option to force complete processing,
>> unless error was exceeding maximum runs of latex/pdflatex.
>> -----
>> Nathan Paxton
>> napaxton at gmail.com
>>
>> (I can) Stand up for hope, faith, love
>> But while I'm getting over certainty
>> Stop helping God across the road like a little old lady.
>> —U2
>
> Howdy,
>
> First (minor) question: why are you using the 4.37 engines with 4.35? If you downloaded the Latexmk4.37TeXShop.zip there was another folder with a tslatexmk folder containing the update to latexmk 4.37. In any case those engines should work fine with 4.35.
>
> Could you try to clean up all the files from the previous run. Is there, in fact a syllabus.bbl file present? Does the Console show that biber has been run?
>
> Good Luck,
>
> Herb Schulz
> (herbs at wideopenwest dot com)
>
>
>
>
> ----------- Please Consult the Following Before Posting -----------
> TeX FAQ: http://www.tex.ac.uk/faq
> List Reminders and Etiquette: http://email.esm.psu.edu/mac-tex/
> List Archive: http://tug.org/pipermail/macostex-archives/
> TeX on Mac OS X Website: http://mactex-wiki.tug.org/
> List Info: https://email.esm.psu.edu/mailman/listinfo/macosx-tex
More information about the MacOSX-TeX
mailing list